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Journal Club

Journal Clubs are held monthly to advance interdisciplinary communication and integrate knowledge between math and biology.

Year 01 | Center Investigators will present foundational literature in developmental biology and mathematical biology.

September 28, 2018 | Presented by Richard Carthew

October 26, 2018 | Presented by William Kath

November 30, 2018 | Presented by Antonio (Tuca) Auffinger

January  25, 2019 | Presented by Ji-Ping Wang

  • Confidence Limits on Phylogenies: An Approach Using the Bootstrap. Joseph Felsenstein. Evolution. 1985 Jul;39(4):783-791. doi: 10.1111/j.1558-5646.1985.tb00420.x PMID: 28561359 DOI: 10.1111/j.1558-5646.1985.tb00420.x
  • Bootstrap confidence levels for phylogenetic trees. Bradley Efron, Elizabeth Halloran, Susan Holmes. Proc Natl Acad Sci U S A. 1996 Nov 12;93(23):13429-34. PMID: 8917608 PMCID: PMC24110 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC38940/

February 1, 2019 | Presented by Niall Mangan

February 22, 2019 | Presented by Ravi Allada

  • Meta-analysis of Drosophila circadian microarray studies identifies a novel set of rhythmically expressed genes. Keegan KP, Pradhan S, Wang JP, Allada R. PLoS Comput Biol. 2007 Nov;3(11):e208. Epub 2007 Sep 11. PMID: 17983263 PMCID: PMC2098839 DOI: 10.1371/journal.pcbi.0030208
  • A circadian gene expression atlas in mammals: implications for biology and medicine. Zhang R, Lahens NF, Ballance HI, Hughes ME, Hogenesch JB. Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):16219-24. doi: 10.1073/pnas.1408886111. Epub 2014 Oct 27. PMID: 25349387 PMCID: PMC4234565 DOI: 10.1073/pnas.1408886111

Friday, April 26, 2019 | Presented by Erik Andersen

Friday, May 17, 2019 | Presented by Rosemary Braun

June 28, 2019 | Presented by Alec Wang

  • A clonogenic common myeloid progenitor that gives rise to all myeloid lineages. Akashi K, Traver D, Miyamoto T, Weissman IL. Nature. 2000 Mar 9;404(6774):193-7. PMID: 10724173 DOI: 10.1038/35004599 https://www.nature.com/articles/35004599
  • Clonal dynamics of native haematopoiesis. Sun J, Ramos A, Chapman B, et al. Nature. 2014;514(7522):322–327. PMID: 25296256 PMCID: PMC4408613 doi:10.1038/nature13824 https://www.nature.com/articles/nature13824

Year 02 | Center Scholars and Fellows will present recent literature of interest to the center projects in developmental biology and mathematical biology.

September 27, 2019 | Presented by Matt Hope

October 25, 2019 | Presented by Marta Iwanaszko

  • Temperature compensation and temperature sensation in the circadian clock. Philip B. Kidd, Michael W. Young, and Eric D. Siggia. PNAS November 17, 2015 112 (46) E6284-E6292; first published November 2, 2015 https://doi.org/10.1073/pnas.1511215112

November 22, 2019 | Presented by Gaotian Zhang

  • Dampening of expression oscillations by synchronous regulation of a microRNA and its target. Hyun Kim, Dong, Dominic Grün, and Alexander van Oudenaarden.  Nature Genetics. 2013 Nov;45(11):1337-44. doi: 10.1038/ng.2763. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812263/
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